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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactatatatctcacttcatcaattcattctatatgttattaagtttgcaattgcttgcaagcataatgaatatcactactgagtaatgactttt...

Basic information

species Glycine max
transcript GLYMA19G36580.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208311797|gb|GE106919.1|GE106919
EST:     ATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|207726198|gb|GD701486.1|GD701486
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTT
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTT
EST: gi|207786895|gb|GD755368.1|GD755368
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|192316336|gb|FK011681.1|FK011681
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|17022163|gb|BM093197.1|BM093197
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|298188879|gb|HO035572.1|HO035572
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|193660878|gb|FK602150.1|FK602150
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTAGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|192296879|gb|FG990240.1|FG990240
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|193546811|gb|FK501364.1|FK501364
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|151406826|gb|EV276641.1|EV276641
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|151395109|gb|EV264980.1|EV264980
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
EST: gi|14999641|gb|BI320475.1|BI320475
EST:     ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA
genomic: ATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacta ... gttggaacagGTACGAGATCTTGTTATTTCACGTGGTCTTAATCTCATCATTGAACCAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactatatatctcacttcatcaattcattctatatgttattaagtttgcaattgcttgcaagcataatgaatatcactactgagtaatgactttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC