1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATAGTGAGTTTGACTTGGAAAACATTGTAGAGGCTGCAAAAAGGGCTGGGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgttgtacaggtttgacacacgagtagcgaagtttgactcatgcgtcttgtaattcacttagaggatagaggttttggcaatttttgcaacaat...
species | Glycine max |
transcript | GLYMA19G36580.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGEST: gi|208292173|gb|GE093379.1|GE093379
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTG
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|208076524|gb|GD873941.1|GD873941
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|19268834|gb|BM885090.1|BM885090
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GAAGAAAGG-CAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTEST: gi|26057499|gb|CA800413.1|CA800413
genomic: GAAGAA-GGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATT
EST: GGAAGAAGGGCAATGTTTTACTTCGGAATAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGAAATAAAAACTCTAAATTTEST: gi|193361576|gb|FK325240.1|FK325240
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTT
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|193579850|gb|FK534967.1|FK534967
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|17022163|gb|BM093197.1|BM093197
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|192296879|gb|FG990240.1|FG990240
genomic: GTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|151406826|gb|EV276641.1|EV276641
genomic: GATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAEST: gi|193723463|gb|FK657143.1|FK657143
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTAEST: gi|6454757|gb|AW185440.1|AW185440
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTG-ATCCAC-G GTTCATCCT-ATGTTGC-ACTGGGAATAEST: gi|192317324|gb|FK010555.1|FK010555
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATA
EST: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAG GTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
genomic: GGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgtt ... tcatccttagGTTCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAGTGAGTTTGACTTGGAAAACATTGTAGAGGCTGCAAAAAGGGCTGGGAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTGGATCCACAGgtatgttgttgtacaggtttgacacacgagtagcgaagtttgactcatgcgtcttgtaattcacttagaggatagaggttttggcaatttttgcaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG