1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agctcaatttgtagttttgcactactttatgttgattctcaatctttatctaaatataaaatgttgaaattattgttgcatttttttctttctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
species | Glycine max |
transcript | GLYMA19G36580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193431335|gb|FK396885.1|FK396885
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: GTCTCAAACTTGTA-GGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193432228|gb|FK392556.1|FK392556
genomic: G-CTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|208292173|gb|GE093379.1|GE093379
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACEST: gi|207726198|gb|GD701486.1|GD701486
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGAC
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|207786895|gb|GD755368.1|GD755368
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: ACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193361576|gb|FK325240.1|FK325240
genomic: ACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTAEST: gi|193579850|gb|FK534967.1|FK534967
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTEST: gi|17022163|gb|BM093197.1|BM093197
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATT
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|192296879|gb|FG990240.1|FG990240
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCGACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|151406826|gb|EV276641.1|EV276641
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|193332616|gb|FK301216.1|FK301216
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|192317324|gb|FK010555.1|FK010555
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAEST: gi|14999641|gb|BI320475.1|BI320475
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
ttatctaaatataaaatgttgaaattattgttgcatttttttctttctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
atctaaa putative branch site (score: 3)
ttattgttgcattttt putative PPT
taaatataaaatgttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctcaatttgtagttttgcactactttatgttgattctcaatctttatctaaatataaaatgttgaaattattgttgcatttttttctttctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGATCAGGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - -tgcacta
- - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - -aaatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa