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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGAGAAGCTGCAGTGCTTTTTAGATGCAGTGAAGGAACATCCTAATGAGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatggaaattctttattttttctgttgcttcttttttgctttgctactttgagatataccttattttttttttcaatttatgttttcttgctttat...

Basic information

species Glycine max
transcript GLYMA19G36580.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193413856|gb|FK379617.1|FK379617
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193431335|gb|FK396885.1|FK396885
EST:     GTCTCAAACTTGTA-GGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: G-CTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193432228|gb|FK392556.1|FK392556
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|208292173|gb|GE093379.1|GE093379
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGAC
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGAC
EST: gi|207726198|gb|GD701486.1|GD701486
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|207786895|gb|GD755368.1|GD755368
EST:     ACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: ACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193361576|gb|FK325240.1|FK325240
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTA
EST: gi|193579850|gb|FK534967.1|FK534967
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATT
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATT
EST: gi|17022163|gb|BM093197.1|BM093197
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|192296879|gb|FG990240.1|FG990240
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCGACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|151406826|gb|EV276641.1|EV276641
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193332616|gb|FK301216.1|FK301216
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|192317324|gb|FK010555.1|FK010555
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|14999641|gb|BI320475.1|BI320475
EST:     AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAG                         GTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatgga ... tctttttcagGTTGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGAGAAGCTGCAGTGCTTTTTAGATGCAGTGAAGGAACATCCTAATGAGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGgttagatggaaattctttattttttctgttgcttcttttttgctttgctactttgagatataccttattttttttttcaatttatgttttcttgctttat

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