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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat...

Basic information

species Glycine max
transcript GLYMA19G17920.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g41180.1 (Oryza sativa), 5'ss of exon 10
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgta-aggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgaca-atgatcaatgtgcttcatttgtgattagttgtaat
 || |||||||| |||||||| || || |||||||| || ||| | ||  |||||||||| || ||||||||||| ||||| |||||||||||| |  |  ||  ||     |  | || |      || | |     |  |  ||| | | ||| | |||| |  |||        ||| | ||        
AATCTATGGAGTGCATGACGAAGCTAAAGACAAAGACTTTGAACTGGAGCTGAGCTGGGTATGCGATGAATCAAAGCGCCAGCATGAGAAGgtatatacaagggataaacatgccttctcccttg-ataaatagaacctccc--ttatcatgtgaaatatgaactctgttaccgggctgtcaatacag-----

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat
 || |||||||| ||||| || || |||||||||| ||| || || ||| | |||||| | |||||||||||||| ||||| ||| |||||||          || || | | ||| ||  | |  || | ||  | | ||  |    || |||   |     |  ||    | | |     ||       
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgt----------gttctgttg-ttattt--aaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatact-gcatacag-------

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G028346_T01 (Zea mays), 5'ss of exon 8
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat----
 || |||||||| ||||||||  |||||||||||| ||| || || ||  |||||||| | ||||||||||| |||||||| ||| ||||||||  |  ||         | | || |    |    | |     | | |  ||| |   ||   |||  | ||  ||   | | | || | |  ||| ||    
AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAGgtaccgtgggac-------cagatattcaggcgaaga-atggcctctctatgtttctcgatttgaatt-taaagctgaaacttctttggtcacctgtcatacag

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G130398_T03 (Zea mays), 5'ss of exon 10
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttactt--ctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat-
 || |||||||| |||||||| || |||||||||| ||| || || ||  |||||||| | ||||||||||| |||||||| ||| ||||||||  |  || | | |   |||  | |    |   | |  |   ||  |    || |  ||    ||   | |       ||  ||| ||  || |||||   
AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAGgtactg--ggatattcacgcggagaatgagttgtctctgtatggttc-tcgatgtaaatttgaagcagaaaac------ttttttttttgcgtacttgtacag

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 9
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat--
 || ||||| || || || |||||||||||||| |  || || || |||||||||||||| ||||| || ||||||||||| ||| |||||||||      |  |   |   | |      ||||  |   || |  | ||    |       ||  || | | ||  |  |||   | | ||| || |    
CATTTATGGGGTACACGATGAGGCCAAGGACAAGGCATTTGAGTTGGAAATGAGCTGGGTTTGTGAGGAGTCAAACCGCCAGCATCAGAAGgtaatctcttgaatttatcaagatcaagaaacattaacttaactcatatcttgaagacatctaccctgttgattgcacc-catgc-tcactagctggatagc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31472889|gb|CD414917.1|CD414917
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|151406675|gb|EV276490.1|EV276490
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|151405011|gb|EV274825.1|EV274825
EST:     AATTAGAGGTGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTATCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGTTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|192334683|gb|FK025888.1|FK025888
EST:     AATTAGAAATGAGCTGGGTGTGTAATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|15203950|gb|BI426727.1|BI426727
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|151411404|gb|EV281215.1|EV281215
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         -TACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|151409103|gb|EV278911.1|EV278911
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCGACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAG
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAG
EST: gi|31456760|gb|CD398788.1|CD398788
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|21676130|gb|BQ628481.1|BQ628481
EST:     GATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: GATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|8403145|gb|BE058779.1|BE058779
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|192325978|gb|FK016655.1|FK016655
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCA-CATGAGAAA                         GTACCAGATGAGCTTCTTGAATT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATT
EST: gi|16344394|gb|BI969989.1|BI969989
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|7685409|gb|AW756057.1|AW756057
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGNCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCGNAGGCAGCGGGCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|16344458|gb|BI970053.1|BI970053
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|254321256|gb|GR827705.1|GR827705
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTC
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTC
EST: gi|207747548|gb|GD720253.1|GD720253
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAAATTAGCAAAGGCA
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAA-TTAGCAAAGGCA
EST: gi|193712489|gb|FK649652.1|FK649652
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGACTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAG-CTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCT
EST: gi|254321257|gb|GR827706.1|GR827706
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
EST: gi|26047788|gb|CA784463.1|CA784463
EST:     AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGA
genomic: AATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGA
EST: gi|16104849|gb|BI892589.1|BI892589
EST:     GAATCAAACCGCCAACATGAGAAG                         GTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT
genomic: GAATCAAACCGCCAACATGAGAAGgtaaggctgg ... tcttttacagGTACCAGATGAGCTTCTTGAATTAGCAAAGGCAGCGGCCAAAGCAGCTCTT