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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatactttttgttatttgatagcaacttcctgacttccttataattacacatgcaattgctattccttttttgaagttccatgtgctatttttgtaatgatatgttcgtttggtaattgttctag

Basic information

species Glycine max
transcript GLYMA19G17920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 7
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatactttttgttatttgatagcaacttcctgacttccttataattacacatgcaattgctattccttttttgaagttccatgtgctatttttgtaatgatatgttcgtttggtaattgttctag-------------------------------------------------------------
||||||||| |||||||| || || ||||||||||| ||||||| ||||||| | |||||| | || || || || ||||| ||||| |||      | | ||   |  | | | |    ||| | | | |   |||    |  |  |  |       || || | | |||   |  |    |  |   ||    | ||||   | |||   ||                                                              
ACCTTTTGGTTGTGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCGTATgtaagttgttactgtattgcatagttgtatcaatgtgagtgcat-aggcttatggctttagctttttcatgaattatgca-tcccaccagtcacacgttcatgaatgaccttgtttttaagttgcattacacattaggagtcttgtgagtttgaaatacataatgtttattgactttacgaacttgaacag

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 7
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatactttttgttatttgatagcaacttcctgacttccttataattacacatgcaattgctattccttttttgaagttccatgtgctatttttgtaatgatatgttcgtttggtaattgttctag
 |||||||| || ||||| || || ||||||||||| |||||||  |||||| | |||||| | ||||| || || ||||||||||| |||      |   ||  |  ||  ||   |  |    ||   || | | || | ||   |  | ||  |||    | |    ||||  |   |  || |||                          
GCCTTTTGGCTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGGCCACAGCTCTACATGATAGAACCCTCAGGAGTTTCTTATgtaagttggtactgcatt--tccattacatagttgta---tcaacatgagtgcataggctcattgtgttagtttgaatatgaattatgtcttccatcagtcatgt-------------------------

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G028346_T02 (Zea mays), 5'ss of exon 1
---------------ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatactttttgttatttgatagcaacttcctgact---tccttataattacacatgcaattgctattccttttttgaagttccatgtgctatttttgtaatgatatgttcgtttggtaattgttctag
               ||||||||| || ||||| || || ||||||||||| ||||||| ||||||| | |||||| | || || || || ||||| ||||| |||      | | |||  |  | | | | |  |   |   ||  | | | |    | ||   ||   ||   ||||  | |  | |||   |    |                                 
TTTCTGTTATATCAGACCTTTTGGTTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgttactgtattacatagttgtatcattgtatttgtatcaatgtgagtgtgtaggcttatggctttagcttttacatgaactatgcattccact---------------------------------

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G028346_T01 (Zea mays), 5'ss of exon 5
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatactttttgttatttgatagcaacttcctgact---tccttataattacacatgcaattgctattccttttttgaagttccatgtgctatttttgtaatgatatgttcgtttggtaattgttctag
||||||||| || ||||| || || ||||||||||| ||||||| ||||||| | |||||| | || || || || ||||| ||||| |||      | | |||  |  | | | | |  |   |   ||  | | | |    | ||   ||   ||   ||||  | |  | |||   |    |                                 
ACCTTTTGGTTGCGGTGTTATTCTTGGAGGTTATGATAGGGATGGACCACAGCTTTACATGATAGAGCCCTCAGGAGTTTCCTATgtaagttgttactgtattacatagttgtatcattgtatttgtatcaatgtgagtgtgtaggcttatggctttagcttttacatgaactatgcattccact---------------------------------

upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 6
ACCTTTTGGATGTGGTGTCATACTAGGAGGTTATGACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagt--atactttttgttatttg-------atagcaacttcctgacttcc-ttataa----ttacacatgcaattgctattcctt---ttttgaagttccatgtgctatttttgtaatgatatgtt---cgtttggtaattgttctag--------------
||||||||||||||| || || || |||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||| |||||||||  ||| ||    | | |||        | |  |     ||  |||  |||| |    |||| |||| |  | ||| || ||   | || |   |  ||||| |  | || |   |  || ||   | ||| ||  || || |                
ACCTTTTGGATGTGGAGTAATTCTTGGAGGTTATGACAGAGATGGACCACAATTGTACATGGTTGAACCTTCTGGTGTTTCCTATgtgagttgatatttggcataagttgtagagctgtggttatcaaatgtattctgttatgagcttttactcatgtatctactactctttcagtcttcagaatttatgtggtggtgttatttgggaatttttttcattttgtgcttcttttttttttttggttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31472889|gb|CD414917.1|CD414917
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151409523|gb|EV279331.1|EV279331
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151406675|gb|EV276490.1|EV276490
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151405011|gb|EV274825.1|EV274825
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192334683|gb|FK025888.1|FK025888
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTTTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|15203950|gb|BI426727.1|BI426727
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151411404|gb|EV281215.1|EV281215
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192334682|gb|FK025887.1|FK025887
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|151409103|gb|EV278911.1|EV278911
EST:     ACAGGGATGAACCACGGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192324735|gb|FK018771.1|FK018771
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192325082|gb|FK017498.1|FK017498
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|192325978|gb|FK016655.1|FK016655
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|16344394|gb|BI969989.1|BI969989
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|7685409|gb|AW756057.1|AW756057
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|16344458|gb|BI970053.1|BI970053
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|254321256|gb|GR827705.1|GR827705
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|193624088|gb|FK573912.1|FK573912
EST:     GAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: GAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|16347339|gb|BI972934.1|BI972934
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAG
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAG
EST: gi|254321257|gb|GR827706.1|GR827706
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|26047788|gb|CA784463.1|CA784463
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAAC
EST: gi|6726863|gb|AW311282.1|AW311282
EST:     ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTAT                         AGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCATGCTGCTAAAACAGAG
genomic: ACAGGGATGAACCACAGTTGTACATGGTCGAACCTTCTGGTGTTTCTTATgtgagtatac ... attgttctagAGATATTTCGGTGCTGCAATTGGCAAGGGCAGGCAGGCTGCTAAAACAGAG