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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcctgattattggctatagtttttgtagtttttataatattcttaaatcgagattttcctatgctgtattttgaatgtattgttatgtctctt...

Basic information

species Glycine max
transcript GLYMA19G17920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 8
AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcctgattat-tggctatagtttttgtagtt----tttataatattc-ttaaatcgagattttcctatgctgtattttgaatgtattgttatgtctctt
||||||||| ||||| |||||| ||||  || | |||||||||||| |||||||||| || || |||| |||||| |  || |   | |||| | ||    |||    ||| | | | |  | |  || | ||||| || |  |  | |||   |  ||   ||        
AGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTATTGAAGTAGCCAAGATgtgagtagcattcttttactgttataatattgcctgttacgttttgtgacactgatcatgtctatattttactgtttttcacttttgtttaatatataaa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31472889|gb|CD414917.1|CD414917
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|151409523|gb|EV279331.1|EV279331
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|151406675|gb|EV276490.1|EV276490
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|151405011|gb|EV274825.1|EV274825
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAGGT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|192334683|gb|FK025888.1|FK025888
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|15203950|gb|BI426727.1|BI426727
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|151411404|gb|EV281215.1|EV281215
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAA
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGG-AGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAA
EST: gi|192334682|gb|FK025887.1|FK025887
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAG-ACAAAGATT-CGAATTAGAA-T
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|151409103|gb|EV278911.1|EV278911
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|192325082|gb|FK017498.1|FK017498
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|8403145|gb|BE058779.1|BE058779
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|192325978|gb|FK016655.1|FK016655
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|16344394|gb|BI969989.1|BI969989
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGATTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|7685409|gb|AW756057.1|AW756057
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|16344458|gb|BI970053.1|BI970053
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGATTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|254321256|gb|GR827705.1|GR827705
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|193624088|gb|FK573912.1|FK573912
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|207747548|gb|GD720253.1|GD720253
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|193712489|gb|FK649652.1|FK649652
EST:     TGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: TGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|254321257|gb|GR827706.1|GR827706
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: gi|26047788|gb|CA784463.1|CA784463
EST:     AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT                         TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcctgattattggctatagtttttgtagtttttataatattcttaaatcgagattttcctatgctgtattttgaatgtattgttatgtctctt

- - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG