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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttttctgaaattttctggtgcattagggtttcttttagtgtttatttttttatttaaaaaattgaataattttatgagttgggtttttgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG

Basic information

species Glycine max
transcript GLYMA19G17920.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G17920.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaggttttttctgaaattttctggtgcattagggtttcttttagtgtt---tatttttttatttaaaaaattgaataattttatgagttgggtttt-tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG
       | || |||| | |  || |   || ||||||  |    | ||    |  |||||  | ||  ||| |  |   |   ||  |    |||  |||  ||||||| |||||||| |||||| | || || |||||||| || |||||||| || ||||| || || |||||||||||  |||| |||
-------tgttgtgaa-tctgttgttagttttgggttttgtaagattttacgcagatttttgataaaggaatggtcttgctaagtgtttatcatttggtggtttttagGGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAGAATCCATTCTGTTCATCGTCATGCTGGCATG

upper sequence: GLYMA19G17920.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 3'ss of exon 2
gtaggt-tttttctgaaattttctggtgcattagggtttcttttagtgtttatttttttatttaaaaaattgaataattttatgagttgggtttttgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG
||  || ||| | |||  |||  |  | | ||  | | | || | ||||||    |||| ||| |     ||    |||||    ||||   ||  ||| ||||||| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| |||
gtgagtgtttctatgatttttctttcttccttctgttgttttctggtgtttgggattttttttga-----tgttggattttg---gttg---ttgcggggtttagGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166742|gb|HO010181.1|HO010181
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATGGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|151409523|gb|EV279331.1|EV279331
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|151406675|gb|EV276490.1|EV276490
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|151411404|gb|EV281215.1|EV281215
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|192334682|gb|FK025887.1|FK025887
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGCTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|151409103|gb|EV278911.1|EV278911
EST:     GCCTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|192324735|gb|FK018771.1|FK018771
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|192325082|gb|FK017498.1|FK017498
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|8827689|gb|BE211419.1|BE211419
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|26048077|gb|CA784674.1|CA784674
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|192325978|gb|FK016655.1|FK016655
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|298176424|gb|HO026659.1|HO026659
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|16344394|gb|BI969989.1|BI969989
EST:     AGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: AGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|16344458|gb|BI970053.1|BI970053
EST:     GCGGGACTGTTA-TGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTNNNGGGTTCNNATAGA
genomic: GCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|254321256|gb|GR827705.1|GR827705
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|16347339|gb|BI972934.1|BI972934
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|20498037|gb|BQ272967.1|BQ272967
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|26047788|gb|CA784463.1|CA784463
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|208110680|gb|GD913200.1|GD913200
EST:     TAACAGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: TAACAGCGGGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
EST: gi|6726863|gb|AW311282.1|AW311282
EST:     GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG                         GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA
genomic: GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGgtaggttttt ... tgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttttatttaaaaaattgaataattttatgagttgggtttttgggctttagGGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG
                                         ttttt  CT-rich tract
     ttttatttaaaaaatt  TA-rich tract