1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaccaaagtataaggatttcttaactctgaggtttaattaaatgtttgctttcttcttttaagaagaaaaatgtttatgctggcttatgtttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAG
species | Glycine max |
transcript | GLYMA19G17920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|151409523|gb|EV279331.1|EV279331
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|151406675|gb|EV276490.1|EV276490
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTTGCTGACCGTGTGGCTAEST: gi|151405011|gb|EV274825.1|EV274825
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAAC-TTGCTGACCGTGTGGCTA
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|151411404|gb|EV281215.1|EV281215
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|192334682|gb|FK025887.1|FK025887
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTACTGACCGTGTGGCTAGEST: gi|151409103|gb|EV278911.1|EV278911
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|192324735|gb|FK018771.1|FK018771
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCAGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|192325082|gb|FK017498.1|FK017498
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|26048077|gb|CA784674.1|CA784674
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|192325978|gb|FK016655.1|FK016655
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCAGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|298176424|gb|HO026659.1|HO026659
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|16344394|gb|BI969989.1|BI969989
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|7685409|gb|AW756057.1|AW756057
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|16344458|gb|BI970053.1|BI970053
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|254321256|gb|GR827705.1|GR827705
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|16347339|gb|BI972934.1|BI972934
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|20498037|gb|BQ272967.1|BQ272967
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|254321257|gb|GR827706.1|GR827706
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|26047788|gb|CA784463.1|CA784463
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGEST: gi|208110680|gb|GD913200.1|GD913200
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
EST: GGCAGGCAAATTGTTGCTAGGGCTAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTEST: gi|6726863|gb|AW311282.1|AW311282
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGT
EST: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAG TGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
genomic: GGCAGGCAAATTGTTGCTAGGGCCAAGTCTGAAGCAACTAACTATGACAGgtttacttca ... ttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAG
ttgctttcttcttttaagaagaaaaatgtttatgctggcttatgtttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAG
cttatgtttcttttc CT-rich tract
ttttaagaagaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccaaagtataaggatttcttaactctgaggtttaattaaatgtttgctttcttcttttaagaagaaaaatgtttatgctggcttatgtttcttttcagTGTATATGGCGAACCAATTCCTGTTAAGGAACTTGCTGACCGTGTGGCTAGTTATGTGCACCTCTGTACGCTATATTGGTGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - ctgaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggc