1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttggtactttttttttttttttaattcgtggttttgaaattgaaacggaaatagtttattgaataattatgatttttttttgtgattttgtatttttttttgtatttggtagtgatcctagatttgaaactttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
species | Glycine max |
transcript | GLYMA19G17920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|151409523|gb|EV279331.1|EV279331
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|151406675|gb|EV276490.1|EV276490
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: TGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|151411404|gb|EV281215.1|EV281215
genomic: TGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|192334682|gb|FK025887.1|FK025887
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|151409103|gb|EV278911.1|EV278911
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GCCTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|192324735|gb|FK018771.1|FK018771
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|192325082|gb|FK017498.1|FK017498
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|8827689|gb|BE211419.1|BE211419
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|26048077|gb|CA784674.1|CA784674
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|192325978|gb|FK016655.1|FK016655
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|298176424|gb|HO026659.1|HO026659
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|254321256|gb|GR827705.1|GR827705
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|16347339|gb|BI972934.1|BI972934
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|20498037|gb|BQ272967.1|BQ272967
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|26047788|gb|CA784463.1|CA784463
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTGEST: gi|6726863|gb|AW311282.1|AW311282
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
EST: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGG GACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
genomic: GGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactt ... tttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
ttttgtatttttttttgtatttggtagtgatcctagatttgaaactttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
ctttgtt CT-rich tract
tatttttttttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtactttttttttttttttaattcgtggttttgaaattgaaacggaaatagtttattgaataattatgatttttttttgtgattttgtatttttttttgtatttggtagtgatcctagatttgaaactttgttgtagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG
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