1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaatcttttatagacatgcttctccttaaataagtcaattgcttgatataaataatacatttctcacaataattttttgcatttgtttgtgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG
species | Glycine max |
transcript | GLYMA19G17920.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|151409523|gb|EV279331.1|EV279331
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAATEST: gi|151406675|gb|EV276490.1|EV276490
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|151405011|gb|EV274825.1|EV274825
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAGGTEST: gi|192334683|gb|FK025888.1|FK025888
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|15203950|gb|BI426727.1|BI426727
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|151411404|gb|EV281215.1|EV281215
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAAEST: gi|192334682|gb|FK025887.1|FK025887
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGG-AGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAA
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAG-ACAAAGATT-CGAATTAGAA-TEST: gi|151409103|gb|EV278911.1|EV278911
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|192325082|gb|FK017498.1|FK017498
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|8403145|gb|BE058779.1|BE058779
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|192325978|gb|FK016655.1|FK016655
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAAGACAAAGATTTCGAATTAGAAATEST: gi|16344394|gb|BI969989.1|BI969989
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGATTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|7685409|gb|AW756057.1|AW756057
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|16344458|gb|BI970053.1|BI970053
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGATTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|254321256|gb|GR827705.1|GR827705
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|193624088|gb|FK573912.1|FK573912
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|207747548|gb|GD720253.1|GD720253
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|193712489|gb|FK649652.1|FK649652
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: TGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|254321257|gb|GR827706.1|GR827706
genomic: TGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATEST: gi|26047788|gb|CA784463.1|CA784463
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
EST: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAAT TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
genomic: AAGCTTGCTGATATGACATGTCGACAAGGGCTTATTGAAGTGGCTAAAATgtaagtagcc ... tgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAAT
gatataaataatacatttctcacaataattttttgcatttgtttgtgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG
ttctcac putative branch site (score: 2)
aaataatacatttctc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatcttttatagacatgcttctccttaaataagtcaattgcttgatataaataatacatttctcacaataattttttgcatttgtttgtgccaagcagTATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAG
- - - - - - agacatg
- - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - ataaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt