1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attactcacgggatagaacaatggatttatattcttaccttctttctccacatttttgtcactgctaaaattccatgtgtcttgttgattgtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTACAGTTGACTTGTTTTCCATTCCTGAACTGGCAGTGCAGCCAAACAACA
species | Glycine max |
transcript | GLYMA17G35000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAG GCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTEST: gi|208261720|gb|GE060495.1|GE060495
genomic: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAGgttagatatt ... gtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
EST: GGAGCCATTTCTCAACCACAG GCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTEST: gi|6069932|gb|AW099514.1|AW099514
genomic: GGAGCCATTTCTCAACCACAGgttagatatt ... gtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
EST: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAG GCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTEST: gi|207811968|gb|GD783553.1|GD783553
genomic: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAGgttagatatt ... gtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
EST: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAG GCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTEST: gi|7692101|gb|AW760216.1|AW760216
genomic: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAGgttagatatt ... gtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
EST: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAG GCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
genomic: TTGTATCAGCAGAACCTCATCTGGATAAAGGAGCCATTTCTCAACCACAGgttagatatt ... gtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCT
ctccacatttttgtcactgctaaaattccatgtgtcttgttgattgtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTACAGTTGACTTGTTTTCCATTCCTGAACTGGCAGTGCAGCCAAACAACA
taaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactcacgggatagaacaatggatttatattcttaccttctttctccacatttttgtcactgctaaaattccatgtgtcttgttgattgtgtgtatagGCTGAGGTTGATCTATTTTCTTCACAACCAGCCATTCCTGCAGTTACACCTACAGTTGACTTGTTTTCCATTCCTGAACTGGCAGTGCAGCCAAACAACA
- - - - - - - - - caatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttg