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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagctatctatctctttttccgcatatattactttttatttttatttgtttttggttttcatatttagtgaaaatttctgatatcacttctagtaagttaattgcttctgcaatactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG

Basic information

species Glycine max
transcript GLYMA17G35000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323821|gb|FK015617.1|FK015617
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|192330169|gb|FK020514.1|FK020514
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACGAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|254331977|gb|GR843720.1|GR843720
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|193497575|gb|FK460807.1|FK460807
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACC-AAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaaatttctgatatcacttctagtaagttaattgcttctgcaatactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG
                                              tactttc  CT-rich tract
                          taagttaatt  TA-rich tract