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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggccattctcttgtatttagttaatttattcttgcaattaacaacagtgctgacaagtagaataagagagtattttctcataattttctttggattggttaag

Basic information

species Glycine max
transcript GLYMA17G35000.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35000.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g00640.t01 (Vitis vinifera), 5'ss of exon 7
GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggccattctcttgtatttagttaa-tttattcttgcaattaacaacagtgctgacaagtagaataagagagtattttctcataattttctttggattggttaag---
 || | ||||||||||| |||||||| ||  |||||||||||||||| |||||||| || || ||||| ||||| || || || ||| |     ||||||  ||||  || || |||   | | |||||   | || ||   | ||  ||  | | | | | ||| |      ||| || ||   |  ||  |   
TCACTGGCTGTTATAGAGTATTTGGTGGCTAATGGATCTGAACGTGCTGTTGATGATATAATTGAACACACTTTCCAAATCTCAgtatgaattcttctctactattctgtgaactttgcccatacaattcttagcaatgactaaaataaggttgaaaaattgtttccaacatgtttcctctgttcttcttgtgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336972|gb|GR843151.1|GR843151
EST:     GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT                         GCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
genomic: GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggcca ... attggttaagGCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
EST: gi|192323821|gb|FK015617.1|FK015617
EST:     GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT                         GCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
genomic: GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggcca ... attggttaagGCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
EST: gi|192330169|gb|FK020514.1|FK020514
EST:     GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT                         GCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
genomic: GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggcca ... attggttaagGCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
EST: gi|254331977|gb|GR843720.1|GR843720
EST:     GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT                         GCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
genomic: GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggcca ... attggttaagGCACTTTCTAGTTTTGAATATGTCGAACCTAGTGGTAAGGATGTGGGACTC
EST: gi|193497575|gb|FK460807.1|FK460807
EST:     GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT                         GCACTTTCTAGTTTTGAATATGTCGAA
genomic: GATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCTgtaagggcca ... attggttaagGCACTTTCTAGTTTTGAATATGTCGAA