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...ttgtataactgcttgatttcatatattcacaaactttaaaccactaggattggccactggtaacattttattgagtgttttagcatttttcgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT
species | Glycine max |
transcript | GLYMA17G35000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAAEST: gi|207736087|gb|GD711238.1|GD711238
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAA
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|193345140|gb|FK309624.1|FK309624
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|192323821|gb|FK015617.1|FK015617
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|192323472|gb|FK019003.1|FK019003
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|192330169|gb|FK020514.1|FK020514
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|254331977|gb|GR843720.1|GR843720
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGEST: gi|193409765|gb|FK375029.1|FK375029
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTG
EST: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAG GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGC
genomic: AGAGAGAGGTGAATCTGAAGGTGCTCAAGGTTCCGGAAATCGAACAGAAGgtaaacactc ... cgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGC
aggattggccactggtaacattttattgagtgttttagcatttttcgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT
tggtaac putative branch site (score: 2)
catttttc putative PPT
taacattttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtataactgcttgatttcatatattcacaaactttaaaccactaggattggccactggtaacattttattgagtgttttagcatttttcgcaatttagGTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT
- - - - -tgcttga
- - - - - - - - - - - - - -cacaaac
- - - - - - - - - - - - - - - - - - -aaaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - gccactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgtt