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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttacttgaactggctttgggttctattcttattgtccaatccccatactgcaatgattatactgcccctattcttattccagaatgtctgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGCAAATAATTATGGTTCAGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAAC

Basic information

species Glycine max
transcript GLYMA17G35000.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734519|gb|BU765495.1|BU765495
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
EST: gi|6069943|gb|AW099523.1|AW099523
EST:     TCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
genomic: TCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
EST: gi|207839546|gb|GD811741.1|GD811741
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTC
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTC
EST: gi|208223684|gb|GE027043.1|GE027043
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCA
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCA
EST: gi|6069932|gb|AW099514.1|AW099514
EST:     TCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
genomic: TCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
EST: gi|193347290|gb|FK313064.1|FK313064
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTAATAACAAAGTCATCTAC
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTA-T--CAAAGTCATCTAC
EST: gi|208028087|gb|GD824105.1|GD824105
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
EST: gi|27424416|gb|CA935936.1|CA935936
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGC
EST: gi|207725480|gb|GD704072.1|GD704072
EST:     GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAG                         CAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCAT
genomic: GGTGACAATCAAGAGAATTCCTTCAAGAAGGGTTCTGCTCGCTCTGCCAGgtaggacatt ... tgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catactgcaatgattatactgcccctattcttattccagaatgtctgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGCAAATAATTATGGTTCAGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAAC
                                           tctgtctt  CT-rich tract
        aatgattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttacttgaactggctttgggttctattcttattgtccaatccccatactgcaatgattatactgcccctattcttattccagaatgtctgtcttgcagCAAAAGTCAGGAGAACAAGTCATCTAGAGTATCAAAGTCATCTACTAATGCAAATAATTATGGTTCAGTTCCTTCTCAAAGTTCAAGTGTACCTGCAAAC

- - -cttgaac
- - - - - - - gctttgg
- - - - - - - - - - - - - - - - - - - caatccc
- - - - - - - - - - - - - - - - - - - - - - - -tactgca