Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctttccaaataaccatgctatttcctaagattttaagatacaaagagaaggctttttagtggcattttctatgttgatacatatgacttacttttctttcaataacttgaattacttttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT

Basic information

species Glycine max
transcript GLYMA17G35000.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35000.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g00640.t01 (Vitis vinifera), 3'ss of exon 6
gtaattctttccaaataacca-tgctatttcctaagattttaagatacaaagagaaggctttttagtgg----cattttctatgttgatac---atatgacttactt--ttctttcaataacttgaattacttt-tatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT
              ||| |   || ||||| | || || |  |  | ||   |||||  |    |        ||  || || | | |||     | || | |  |   | |  |||||   |   || | ||| | | |||| || | ||||||||||| |||||||| ||  |||||||||||||||| |||||||| || || ||||| ||||| || || || 
------------gtatatctgctgttattttc-aaaatatccattttcatttagaagcttcgccatcattccccaccttatagggttatattgtgtttggcctcttccatgccctcaatttatgatatcattttctgtctcagTCACTGGCTGTTATAGAGTATTTGGTGGCTAATGGATCTGAACGTGCTGTTGATGATATAATTGAACACACTTTCCAAATCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336972|gb|GR843151.1|GR843151
EST:     CTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG                         GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
genomic: CTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGgtaattcttt ... tttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
EST: gi|192323821|gb|FK015617.1|FK015617
EST:     TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG                         GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
genomic: TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGgtaattcttt ... tttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
EST: gi|192330169|gb|FK020514.1|FK020514
EST:     TTTGGACGAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG                         GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
genomic: TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGgtaattcttt ... tttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
EST: gi|254331977|gb|GR843720.1|GR843720
EST:     TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG                         GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
genomic: TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGgtaattcttt ... tttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
EST: gi|193497575|gb|FK460807.1|FK460807
EST:     TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAG                         GCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT
genomic: TTTGGACAAGACTGGGTGAAACTGGAAAAGATTGGCGTTATGTATACAAGgtaattcttt ... tttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgatacatatgacttacttttctttcaataacttgaattacttttatgtcagGCATTAGCTGTTATAGAATATTTGGTAGCACATGGATCTGAACGTGCGGTTGATGACATTATAGAACATACTTTTCAGATATCT
                            caataac  putative branch site (score: 2)
                                        ttactttt  putative PPT
                             aataacttgaattact  TA-rich tract