Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagctatctatctctttttccgcatatattactttttatttttatttgtttttggttttcatatttagtgaaaatttctgatatcacttctagtaagttaattgcttctgcaatactttcag

Basic information

species Glycine max
transcript GLYMA17G35000.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35000.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G11710.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagctatctatctctttttccgcatatattactttttatttttatttgtttttggttttcatatttagtgaaaatttctgatatcacttctagtaagttaattgcttctgcaatactttcag
||  ||||||| || |||||||| ||||||||||| ||||||||||   ||||||||||  | ||||| || || |||||||||     | |||  ||   ||| ||   ||  |||||   | | || |||   |||| | ||     |||           ||  || |  | |||                             
GTATTGGATGCTACAGATAATGAGCCTTGGGGTCCCCATGGTACTGCATTGGCAGAGATAGCTCAGGCCACGAAGAAATTgtaa-----tctctggcttcattttcgtg-attctacttggaaatatttttttgatttgctatt---gcttaacatgtgcacttgccat-atgtttag-----------------------------

upper sequence: GLYMA17G35000.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g00640.t01 (Vitis vinifera), 5'ss of exon 5
GTGCTGGATGCAACTGATAATGAACCTTGGGGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagctatctatctctttttccgcatatattactttttatttttatttgtttttggttttcatatttagtgaaaatttctgatatcacttctagtaagttaattgcttctgcaatac-tttcag
|| ||||||||||| || |||||||||||||| ||||||||  |||  |||||||| ||  | ||||| || ||||||||||||      | ||||  | |  |     | |  |  | ||   |||| ||| | |     | | ||  | ||  | ||    || | |  ||| | ||  |   |       ||   ||  || |||
GTACTGGATGCAACCGACAATGAACCTTGGGGCCCTCATGGCTCTGCCCTGGCAGAAATAGCTCAGGCCACTAAAAAATTgtaatttctaacctattgcatactttctttctcattttattctcttttttttttctcccaatattattctcagaaagaaaaaatg-ttttgctttttgtttgcatacctgaaatgttgtatgttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323821|gb|FK015617.1|FK015617
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|192330169|gb|FK020514.1|FK020514
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACGAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|254331977|gb|GR843720.1|GR843720
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
EST: gi|193497575|gb|FK460807.1|FK460807
EST:     GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACC-AAAAATT                         TACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC
genomic: GGTCCTCATGGTACTGTGCTGGCAGAGATTTCACAGGCTACCAAAAAATTgtaagcagct ... atactttcagTACTGAATGCCAAATGATCATGAATGTCCTTTGGACAAGACTGGGTGAAAC