1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggtcaaatttgtcaatattttcatcccagaattatcaggttgataaagctctactctagattgtgtagtcagaaaataattttcttgtttttctcttgggtgctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCCTCTTATGGTAGTGGCAGCAGCTTTCAGAGCAGTGGTAAATATGGAGGC
species | Glycine max |
transcript | GLYMA17G35000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|23734519|gb|BU765495.1|BU765495
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: ATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|192323821|gb|FK015617.1|FK015617
genomic: ATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|208294360|gb|GE092177.1|GE092177
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: TACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|192330169|gb|FK020514.1|FK020514
genomic: TACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|254331977|gb|GR843720.1|GR843720
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|193374375|gb|FK339355.1|FK339355
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCEST: gi|193387092|gb|FK352929.1|FK352929
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
EST: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAA GTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
genomic: AAAGATAAGATACATGAAGTCAGAAATAAAGCTGCTGCAAACCGTGACAAgtaggtcaaa ... ctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTC
agattgtgtagtcagaaaataattttcttgtttttctcttgggtgctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCCTCTTATGGTAGTGGCAGCAGCTTTCAGAGCAGTGGTAAATATGGAGGC
agaaaataattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcaaatttgtcaatattttcatcccagaattatcaggttgataaagctctactctagattgtgtagtcagaaaataattttcttgtttttctcttgggtgctcaatttagGTACATTGGAGTTTCTTCTAGTGGGATCACATACAAGTCTGGGTCAGCCTCCTCTTATGGTAGTGGCAGCAGCTTTCAGAGCAGTGGTAAATATGGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG