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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGgtactatcttattgcaagttagaatattctattaatacccgtgcaaaaattgattgcaaaattttcag

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008425_T02 (Zea mays), 5'ss of exon 6
GTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGgta--ctatcttattgcaagttagaatattctattaa-tacccgtgcaaaaattgattgcaaaattttcag-----------------------------
| ||||| || ||||| ||| |  ||||||||||||| ||||| ||||| || || ||||| |||||||| ||||||||||| ||  | ||||| ||||||||  |  | |    | |  || |  |  | || ||| ||    | |   | ||   |||   |||    |                             
GATTTCACCATTGTTCAGCAGATGAAGGGGGTGGATTTTGTGCATACGCTGACATCTCTCTCTGCATCCAGTTTGCTTTTGTCCGTCTAAATATCTCAAGgtaaaccctttatcggtagttttgtttgctataataactatgttttcgtgagttatatgcttgattgggtgagtctcttattatgcttgtttgactgcac

upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g00910.t01 (Vitis vinifera), 5'ss of exon 6
GTTTTCATCACTGTTCTGCACAAAAAGGGGGTGGATTCTGTGCTTACGCAGATATTTCTCTATGCATCCACTTTGCTTTTGTTCGGTTGAATATATCAAGgtactatcttattgcaagttagaatattctattaata-cccgtgcaaaaattgatt-----gcaaaattttcag-----------------------------------------------------------
| || |||||||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||| |||| ||| ||| | ||||||||||| || ||||| |    | ||| ||| |   || |  ||     | ||| ||||   |||| ||     |  | | | |||                                                            
GGTTCCATCACTGTTCTGCAGGAAAAGGTGGTGGATTCTGTGCTTATGCAGATATTTCTCTTTGCATACACTATGCCTTTATCCGGTTGAATATTTCTAGgta-tggactgttg-aagctcatatgtaatagatgcagcccttgcatttattgtttattctgtcagaatgtcaattttaaattgttaccttcaagcatgggatctcattctcattatctgcaaaattgtacag