Sequence
atgc intronic sequence ATGC exonic sequencegtactatcttattgcaagttagaatattctattaatacccgtgcaaaaattgattgcaaaattttcagGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATA
Basic information
species | Glycine max |
transcript | GLYMA17G34770.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34770.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g37420.2 (Oryza sativa), 3'ss of exon 6
---------------------------------gtactat-cttattgcaagttagaatattctattaatacccgtgcaaaaattgattgcaaaattttcagGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATA
| ||| | ||| | | | ||| ||| || |||| |||||| | | | ||||| || ||||||||||| ||||| ||||| || |||||||| || ||||||| ||| |||||| |||||
actacttattgcattagttggcagtgttgcaagcttttatattcattctatactgttaaatt-tatctttatatgtgcctaaattgttcgaatcatttt-agAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATG
upper sequence: GLYMA17G34770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g00910.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------------------------------gtactatcttattgcaagttagaatattctattaatacccgtgcaaaa--------attgattgcaaaatttt-cagGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATA
| || || | || | || || | || | | || | ||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||| |||| || | |||| |
gtatggactgttgaagctcatatgtaatagatgcagcccttgcatttattgtttattctgtcagaatgtcaattttaaattgttaccttcaagcatgggatctcattctcattatctgcaaaattgtacagGGTGATGATAATTGATCTTGATGCACATCAAGGAAATGGCCATGAATTGGATTTTTCCAATGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaagttagaatattctattaatacccgtgcaaaaattgattgcaaaattttcagGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATA
ttttc CT-rich tract
aaaaattgattgcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactatcttattgcaagttagaatattctattaatacccgtgcaaaaattgattgcaaaattttcagGGTGATGATCATTGATCTTGATGCACATCAAGGAAACGGTCATGAAATGGACTTCGCTTATGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA