Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaagcttcgtcgattcacgaaattcccggaaatcgttactgagtcaactcggtatttcggtggctcgtccaatttgcatcagGTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCGCCGTCAACCGTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAG

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712839|gb|BW684194.1|BW684194
EST:     ATTTTTATCAACCGCTGCGTTTTTTGCATCGAGTATCCGAGTTAAGCAAG                         GTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCG
genomic: ATTTTTATCAACCGCTGCGTTTTTTGCATCGAGTATCCGAGTTAAGCAAGgtgagttaag ... tttgcatcagGTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaatcgttactgagtcaactcggtatttcggtggctcgtccaatttgcatcagGTTCGCCGCCGTCAAAGCGTTTCCGATTCTCCACCACCGCCGTAGCTGCCGCCGTCAACCGTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAG
                         tattt  TA-rich tract