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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGgtaaattaactgttttattgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatggtag

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g37420.2 (Oryza sativa), 5'ss of exon 5
GTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGgtaaa--ttaactgttttattgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatggtag
 | |||||||||||||| ||||| ||||| |||||||| |||||  | || |  || |||||||| ||||| |    |    ||||  |   |    || ||   | |    | ||   |   |  |  || |    | |   
CTTCCTCCTGTGGCATTCATTCCTAATTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGgtgatgccttgtggtttggtgctagaagttgtatagtttgagtatattgaaggctaattatattttcttag---

upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g00910.t01 (Vitis vinifera), 5'ss of exon 5
GTCCCTCCTGTGGCATTAATTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGgtaaattaactgttt-tattgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatggtag-
||||| ||||| |||||| | ||||||||||||||||| || |||||||||| ||||||  | |||||||| |  | | | ||| | ||| ||| | |||    ||   | |      |   |  |   |||    |   |  
GTCCCCCCTGTTGCATTACTGCCCAATTGTCTTGTGCAGCAGAAAGTTCTTTATCCATTTCGCAAGCAGgtgagatcattatttgtcttggattgtgttttctttccatatagggtctaaaataatttaaatgtgttctaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712839|gb|BW684194.1|BW684194
EST:     TTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAG                         GTTGGAGGAACTATAT
genomic: TTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGgtaaattaac ... caaatggtagGTTGGAGGAACTATAT