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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaactgttttattgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatggtagGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTG

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34770.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g00910.t01 (Vitis vinifera), 3'ss of exon 5
gtaaattaactgttt-tattgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatg-gtagGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTG
|| |  | | | ||| | ||| ||| | |||    ||   | |      |   |  |   |||    |    ||||||| ||||| || |||||||| || |||||||| ||| ||||||||||||| ||  | || || || || |||||||||||||||  |||||| ||||
gtgagatcattatttgtcttggattgtgttttctttccatatagggtctaaaataatttaaatgtgttctaaagGTTGGGGGAACCATTTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTCGGTGGAGGGTTCCATCACTGTTCTGCAGGAAAAGGTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712839|gb|BW684194.1|BW684194
EST:     TTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAG                         GTTGGAGGAACTATAT
genomic: TTCCCAATTGTCTTGTGCAACAAAAAGTTCTTTTTCCATTCAGGAAGCAGgtaaattaac ... caaatggtagGTTGGAGGAACTATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaattctttttagcatctccaaaaatctcatcttgctcctaatcaaatggtagGTTGGAGGAACTATATTGGCTGCGAAACTTGCAAAGGAGAGAGGATGGGCCATTAACATGGGAGGTGGTTTTCATCACTGTTCTGCACAAAAAGGGGGTG
                                      tcctaat  putative branch site (score: 2)
     ttcttttta  TA-rich tract