Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgagctccgcgcactcgcactcttcgcgggtcgattgtttacttcttaggtttgtttttatcgtgactcagGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACT

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712839|gb|BW684194.1|BW684194
EST:     GCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAG                         GTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAG
genomic: GCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaagcgagc ... cgtgactcagGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcactcttcgcgggtcgattgtttacttcttaggtttgtttttatcgtgactcagGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAGAAACT
                                      tttttatc  CT-rich tract
                                  tttgtttttat  TA-rich tract