Sequence
atgc intronic sequence ATGC exonic sequenceGTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaagcgagctccgcgcactcgcactcttcgcgggtcgattgtttacttcttaggtttgtttttatcgtgactcag
Basic information
species | Glycine max |
transcript | GLYMA17G34770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g37420.2 (Oryza sativa), 5'ss of exon 1
GTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaagcgagctccgc-----gcactcgcac----tcttcgcgggtcgattgtttacttc--ttaggtttgtttttatcgtgactcag
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TTCCGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGgtcggtcgccaccgccgccaaggctagcagttgattcctaccggtcgagtcgtcaccgcggttgcgtctgttctctttcccctgcag
upper sequence: GLYMA17G34770.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G008425_T02 (Zea mays), 5'ss of exon 1
GTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaag---cgagctccgcgcactcgcactcttc------gcgggtcgattgtttacttcttaggtttgt-ttttatcgtgactcag
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CTCCTCCTCCTCCTCACCTGCGCCCGCCCTGGCCGGGGAGGCGCTACGCCAGAAACGCATCCTCTCCAGCAAGCTCTACCTCGAGGTCCCGTCCTCCAAGgtcggtcgcgggcatcgtcccatctctagcttccaagatacgcgcgagctgtccttgtctcaatccaatgttttcttgcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209712839|gb|BW684194.1|BW684194EST: GCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAG GTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAG
genomic: GCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaagcgagc ... cgtgactcagGTTCCGCTAATCTACTCCGCGTCTTACGACATAGAGTTTCTCGGCATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCGCCATCGATGTCGTCTTCTTCCGCCAACGATGCCGAGGCTCTCCGGCGCAACCGCATCCTCTCCAGCAAGCTCTACTTCGACGTGTCTCCGTCCAAGgtaagcgagctccgcgcactcgcactcttcgcgggtcgattgtttacttcttaggtttgtttttatcgtgactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT