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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtcattattggatttgctcttatatgtaggttttatgtgaaaagaatatttcattattatgagttagtgttttagtttattcctttaccactcaccataggttgtgcttgtgctattttgtacacacagATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAG

Basic information

species Glycine max
transcript GLYMA17G34770.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34770.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0008g00910.t01 (Vitis vinifera), 3'ss of exon 11
gtaatgtcattattggatttgctcttatatgtaggttttatgtgaaaagaatatttcattattatgagttagtgttttagtttattcctttaccactc-accataggttgtgcttgtgctattttgtacacacagATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAG
                                  | | | ||  |      | |||| || || | || | |   ||  ||| |       |   ||  | |     ||      || |    ||       |||||||||||||||||  | ||   |||||||||||| |||||| | ||||||||||| || || |||||| || | |||||||| ||||
----------------------------------gctctttgc-acctttttgtttctttgttcttagcttgatgttctgttcaagatagcattgctttaacgagtatttaaaaggttcatcctttcttgtgcagATCAGTCCTGAAGGGGTAACTAGTAGAGATGAGAAGGTTTTCAGATTTGCTCGTGAGAAGAAAATTCCTCTCATCATGCTCACATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattcctttaccactcaccataggttgtgcttgtgctattttgtacacacagATCAGTCCTGAAGGAATTACCCTTAGAGATGAGAAAGTTTTCCGGTTTGCTCGTGAAAAAAACATTCCTATCGTTATGCTCACTTCAG
              cactcac  putative branch site (score: 2)
                                       tattttgta  TA-rich tract