1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttacttcattttccgttgtttatcggaaactaatttacaattgcaatatcagtttgactactatcttgatgtcatctgattgctgtgacctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACACTGAAAGCTACTCTTACTCTTACACAAATGTGCAGGCT
species | Glycine max |
transcript | GLYMA08G19950.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|58023947|gb|CX710688.1|CX710688
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatttgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|192301872|gb|FG995490.1|FG995490
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatttgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|13252570|gb|BG363473.1|BG363473
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatttgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatttgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
aatatcagtttgactactatcttgatgtcatctgattgctgtgacctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACACTGAAAGCTACTCTTACTCTTACACAAATGTGCAGGCT
atctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttacttcattttccgttgtttatcggaaactaatttacaattgcaatatcagtttgactactatcttgatgtcatctgattgctgtgacctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGCAACTCCAACACTGAAAGCTACTCTTACTCTTACACAAATGTGCAGGCT
- - cttcatt
- - - - - - - - - - - - - gaaactaa
- - - - - - - - - - - - - - - - - - - caattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgt