Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcatgctaacttctatttagttattgtacaaatcctttccgtttgccccctttttttgggcccattttagtttgttaacttgaattcccatactgattatcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACAGTTTCAATTATACCTCTAGTTTTGGCGGGTA

Basic information

species Glycine max
transcript GLYMA08G19950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301871|gb|FG995489.1|FG995489
EST:     TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|151400699|gb|EV270513.1|EV270513
EST:     TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|192301872|gb|FG995490.1|FG995490
EST:     TGTGGGATCGCTTGCCC                         ATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: TGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|208248987|gb|GE043602.1|GE043602
EST:     TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACTGTCGCTTT
genomic: TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTT
EST: gi|298180139|gb|HO025354.1|HO025354
EST:     TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACTGTCGCTTTTACATCAGTCATGGCAATATTCATCATTGAGCGGATT
genomic: TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
EST: gi|298179594|gb|HO024809.1|HO024809
EST:     TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCC                         ATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT
genomic: TCTATCATCTCAAGCCAGATGATGCTCGCCTTGTGTGGGATCGCTTGCCCgtgagttcat ... atcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgggcccattttagtttgttaacttgaattcccatactgattatcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACAGTTTCAATTATACCTCTAGTTTTGGCGGGTA
                                     tactgat  putative branch site (score: 2)
          attttagtttgttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcatgctaacttctatttagttattgtacaaatcctttccgtttgccccctttttttgggcccattttagtttgttaacttgaattcccatactgattatcattacagATGACTGTCGCTTTTACATCAATCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACAGTTTCAATTATACCTCTAGTTTTGGCGGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA