1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattttatgttatggtataattccctctcaatattcattataaacgcaagccatgcttagattttaaaaatttatttccag
species | Glycine max |
transcript | GLYMA08G19950.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTGCCTCCAATATACACACATTCAACATATTGGCTCTGGGCTGCAG G-TCTTATCTTCTEST: gi|192301872|gb|FG995490.1|FG995490
genomic: TTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCT
EST: TTTGTTGCCTCCAATATACACACATTCAACATATTGGCTCTGGGCTGCAG GGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACGEST: gi|13252570|gb|BG363473.1|BG363473
genomic: TTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
EST: TTGTTGCCTCCAATGTACACCACATTCAACATATTGGCTCTGGGCTGCAG GGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
genomic: TTGTTGCCTCCAATGTACA-CACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCTCTAGTCCAATTTGTGCCATGCATTGTCATTCCTCTAATGGCTATTTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattttatgttatggtataattccctctcaatattcattataaacgcaagccatgcttagattttaaaaatttatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG