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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggattttatgttatggtataattccctctcaatattcattataaacgcaagccatgcttagattttaaaaatttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACGAATGGACGCGACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGC

Basic information

species Glycine max
transcript GLYMA08G19950.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301871|gb|FG995489.1|FG995489
EST:     TTTGTTGCCTCCAATATACACACATTCAACATATTGGCTCTGGGCTGCAG                         G-TCTTATCTTCT
genomic: TTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCT
EST: gi|192301872|gb|FG995490.1|FG995490
EST:     TTTGTTGCCTCCAATATACACACATTCAACATATTGGCTCTGGGCTGCAG                         GGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
genomic: TTTGTTGCCTCCAATGTACACACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
EST: gi|13252570|gb|BG363473.1|BG363473
EST:     TTGTTGCCTCCAATGTACACCACATTCAACATATTGGCTCTGGGCTGCAG                         GGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG
genomic: TTGTTGCCTCCAATGTACA-CACATTCAACATATTGGCTCTGGGCTGCAGgtttggattt ... ttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaatattcattataaacgcaagccatgcttagattttaaaaatttatttccagGGTCTTATCTTCTAGCTAAGGTGCTAGAGGCTACTGATGATGTGATCTACGAATGGACGCGACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGC
                                            tttatttcc  CT-rich tract
                          atgcttagattttaaa  TA-rich tract