1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACAGTTTCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccactgtttattttgttccatcttttatgactataattgaagacagttgttctttctttgtatggataaaacatgaactacttgtgaattctgc...
species | Glycine max |
transcript | GLYMA08G19950.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCATEST: gi|151400699|gb|EV270513.1|EV270513
genomic: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... tttaccccagATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCAT
EST: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCATEST: gi|192301872|gb|FG995490.1|FG995490
genomic: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... tttaccccagATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCAT
EST: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAG ATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCAT
genomic: TCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccac ... tttaccccagATTCTTTGATGACCTGCGCCCATATGCTCTAGTCCAATTTGTGCCATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGCAATATTCATCATTGAGCGGATTGATGAGAGGAAGGGAACAGTTTCAATTATACCTCTAGTTTTGGCGGGTATAATAAGCATTGTGTATTGGAGgcaagcccactgtttattttgttccatcttttatgactataattgaagacagttgttctttctttgtatggataaaacatgaactacttgtgaattctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaaa