1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ggagatggttacttcagaaatgtttaagaagccagctatttctgtatactttcagtgagtttgtcacttattgtctgtatggcccttttaccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGT
species | Glycine max |
transcript | GLYMA04G39980.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA ATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGEST: gi|51335336|gb|CO979202.1|CO979202
genomic: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAgtaaagcatc ... ccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGG
EST: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA ATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGEST: gi|193406314|gb|FK370625.1|FK370625
genomic: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAgtaaagcatc ... ccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGG
EST: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA ATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGG
genomic: GGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAgtaaagcatc ... ccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGG
atactttcagtgagtttgtcacttattgtctgtatggcccttttaccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGT
cccttttaccccttac CT-rich tract
acttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagatggttacttcagaaatgtttaagaagccagctatttctgtatactttcagtgagtttgtcacttattgtctgtatggcccttttaccccttacagATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAAAAAGATGGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -gatggtt
- - - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg