Sequence
atgc intronic sequence ATGC exonic sequence...ggtagtgctttcttctagtgtgcatgaattgtatactaacgtatgaagcttatgctatgtaatccctctatatggttcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g03710.1 (Oryza sativa), 3'ss of exon 11
ggtagtgctttcttctagtgtgcatgaattgtatactaacgtatgaagcttatgctatgtaatccctctatatggtt-catct-ttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
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--tgatatgaattttcacacgtcatgtttctttcacttttatttcacgcaccttttatactgtttgatttggagattgcatttcttgactcgggatgactagATATTGCTGACGTCACTAACTTTGTTCATCCTGGTACTCCTCTTGATGAGGAGGCCTCACAAAGGGGCACTTCTGTATATCTTGTTGGACAGCGAATTGA
upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G031859_T03 (Zea mays), 3'ss of exon 11
-----ggtagtgctttcttctagtgtgcatgaattgtatactaacgtatgaagcttatgctatgtaatccctctatatggttcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
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cttcaactaat--ttacttttggtctcggtcacaacttttctgtcctg---gtcattcactctgtgctactgatacatagactgcattccttgacttgagctgagATATCGCTGATGTCACTAATTTTGTTCACCCTGGTACCCCTCTTGATGAGGAAGCTGCGCAAAGGGGCACTTCTGTTTATCTTGTTGGGCAGCGGATTGA
upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G17510.1 (Arabidopsis thaliana), 3'ss of exon 11
ggtagtgctttcttctagtgtgcatgaattgtatactaacgtatgaagcttatgctatgtaatccctctatatggt--tcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
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-gaatcggtatcttccagaatttgtagctagttccgttgtattctcttcttgt-cttgggagtgaatatatatgatgcttatccttgaccatgtttgattagACATTGCTGATGTAACGAATTTTGTTCACCCTGGTACTCCTTTGGATGATGAGGCATCAAAAAGAGGCACATCTGTCTACCTTGTTGAGCGCCGTATTGA
upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 11
--ggtagtgctttct--tctagtgtgcatga-attgtatactaacgtatgaagcttatgctatgtaatccctctatatggttcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
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ctggcattggcttatgctttgttcttcatgtcattccaaactacttcttacaagcttcagtatggagtt----tacatg-ttaatctttaatgatatttaatcagACATTGCTGATGTAACAAATTTTGTTCACCCTGGCACTCCCCTTGATGACGAGGCTGCCCAAAGGGGCACATCTGTCTACCTTGTTGAGCGCAGAATTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcttatgctatgtaatccctctatatggttcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
atctttaat putative branch site
tttctgtc putative PPT
atctttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtagtgctttcttctagtgtgcatgaattgtatactaacgtatgaagcttatgctatgtaatccctctatatggttcatctttaatggatttctgtcagATATTGCTGATGTGACTAATTTTGTTTATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGA
ggtagtg
- - - - - -cttctag
- - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgta