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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCAGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGgtttttttttaatctgacttttaactttagttttgttatgcatttacagtatgtctaactgcacccttgcctctattctatgtttttgcatgcctttttt...

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 17
TCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCAGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGgttttttttta---atctgacttttaactttagttttgttatgcatttacagtatgtctaactgcacccttgcctctattctatgtttttgcatgcctttttt
| || || || ||||||||||| ||||||||||||||||| ||||||||||| |||||| || |||| || ||   ||||||  | || ||||||||||||| | ||  |    ||||||| |||     ||  ||   | |   ||    ||| | |         |         | ||| || | |    || || |   
TTCGTGAAGCAAACCAAATGGTTGAGGAGTTTATGCTTGCTGCTAATGTTTCAGTTGCAGAAAAAATCCTAAAGCATTTTCCGCTTTGTTCATTATTAAGgtatattggtgtacatctgacatttgcacataccttaagt-tctgttcctggtaggccccctcttttcagcctgcaaagtctgtgctataatttgactatg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304827|gb|FG997037.1|FG997037
EST:     TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAG                         GCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC
genomic: TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGgttttttttt ... tcctgtgtagGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC
EST: gi|7232728|gb|AW568082.1|AW568082
EST:     TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAG                         GCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC
genomic: TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGgttttttttt ... tcctgtgtagGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC
EST: gi|14990802|gb|BI316475.1|BI316475
EST:     TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAG                         GCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC
genomic: TCCGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGgttttttttt ... tcctgtgtagGCGTCATCCAACACCAACAAGAGAGATGCTTGAACCCTTACTACGGACTGC