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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaatttgtggatgctcagatgcttgcttattgttttactcacataattataagtatggttgtattttcttgctatataatgaaattaaaaagtatagctttgtttatgacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 15
gtatggaatttgtgga-----tgctc-agatgc-ttgcttattgttttactcacataattataagtatggttgtattttcttgctatataatgaaa---ttaaaaagtatagctttgtttatgacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG
||||| |  |  |||      ||||  ||| || ||  |||     ||     ||   | | ||    |  | | ||| |||  ||  |     ||   |||  |||||||| ||    ||||| ||   ||   |||||  | ||||||||||||||||||||  | ||||| || ||||| || ||||||||||||||||| || || ||||||||||| ||||||||||
gtatgcatatcctggggcttgtgctttagaggccttatttaggagattgtaggcaatctgagaatggagtgtatttttgctttttaattgtccgaacccttattaagtatag-ttcaaatatgatcttgtagGTCATGAGGCTTAGGCGTATTGAGAGAGGAGCCCTAACTCTAGCTTCTGCAGAAGTCAAATTTCAAATTGATACTGAAACTCATGATCCTCTTGATATTG

upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 15
lower sequence: PP1S81_43V6.1 (Physcomitrella patens), 3'ss of exon 15
gtatggaatttgtggatgctcagatgcttgcttattgttttactcacataattataagtatggttgtattttcttgctatataa----tgaaattaaaaagtat--agctttgtttatgacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG
                           | |  |    ||  |  | | |  || |||| | ||| ||    |     ||| |||    |   | ||||  ||||    | |   || ||   || ||||  ||||||||||| ||||||||| | |||||||| || || |||||  |||| ||||| ||| |||| || || || || ||||| ||||||||| |||
--------------------------ttagtgtgacattggatacgccttgtt-taag-agggtggtgcactagcattatttaagcactattactaaagtgtatttgacatgcattgtggtttaacagATCATGAGATTAAGACGTATTGAGCGTGGAGCTTTAACCCTCGCATCGCCTGAAGTCAAGTTTGAAATCGATACAGAAACACATGACCCACTTGATGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304827|gb|FG997037.1|FG997037
EST:     TGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAG                         AAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCT
genomic: TGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGgtatggaatt ... gacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCT
EST: gi|14990802|gb|BI316475.1|BI316475
EST:     TGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAG                         AAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCT
genomic: TGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGgtatggaatt ... gacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcttgctatataatgaaattaaaaagtatagctttgtttatgacctatcagAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG
          tatataatgaaattaa  TA-rich tract