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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGgtataattttcttacataatagcatttaacatttctttttgaggttgtagaaggtgggcaattgtgtattcttattatgaagttctgctggtgtcatcaa...

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 16
AAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGgtataattttcttacataatagcatttaacatttctttttgaggttgtagaaggtgggcaattgtgtattcttattatgaagttctgctggtgtcatcaa-
   |||||  | ||||||||||||||||||||  | ||||| || ||||| || ||||||||||||||||| || || ||||||||||| ||||||||||||||  | || | |  |  |     ||    |  |    |||  |         |       | |  |||     | || |  | |  |   || | |   
GTCATGAGGCTTAGGCGTATTGAGAGAGGAGCCCTAACTCTAGCTTCTGCAGAAGTCAAATTTCAAATTGATACTGAAACTCATGATCCTCTTGATATTGgtatggtatt-tgatcttttgtttcttcttttcccaaaatgaaatgtattttaattttttgcttttcattggacatgtggaaatttaataaagttaactgc

upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S81_43V6.1 (Physcomitrella patens), 5'ss of exon 16
AAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGgtataattttctta--------cataatagcat--ttaacatttcttt-ttgaggttgtagaaggtggg-----caattgtgta-ttcttattatgaagttctgctggtgtcatcaa-------------------
|  ||||||||||| ||||||||| | |||||||| || || |||||  |||| ||||| ||| |||| || || || || ||||| ||||||||| ||||||    |||||          || ||| |  |     | | | |||   ||    | |||   |||||      | | ||||| || ||  | | |||  ||  ||||   || ||                   
ATCATGAGATTAAGACGTATTGAGCGTGGAGCTTTAACCCTCGCATCGCCTGAAGTCAAGTTTGAAATCGATACAGAAACACATGACCCACTTGATGTTGgtaagggtttctcgttcctttccaaaatggtttagccgatagtacttgactggtcatttagcttgtgggaacattattagtgtactttttcctctaaagcact-ttggtaaaattaacttgcaatccgatatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304827|gb|FG997037.1|FG997037
EST:     TGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG                         GAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTG
genomic: TGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGgtataatttt ... ttatttgcagGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTG
EST: gi|14990802|gb|BI316475.1|BI316475
EST:     TGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTG                         GAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTG
genomic: TGAGGTCAAATTTCAAATTGACACGGAGACTCATGATCCACTTGATATTGgtataatttt ... ttatttgcagGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTG