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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaatttgaatgagaacctagatttagaatttacaagaaaaaataaattgagtttttgttttgttttgttttgtttttag

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 19
lower sequence: AT2G17510.1 (Arabidopsis thaliana), 5'ss of exon 19
GGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaa---ttgaatttgaatgagaacctagatt--tagaatttacaagaaaaaataaattgagtttttgttttgttttgttttgtttttag
||||| |||||||| ||||| ||||| ||| | ||| ||||||||||||||||||| ||||| |    |      ||| |||| |   | |||  | |   ||   | |  | ||      | ||    ||||   ||  ||  |    ||
GGTGAGGATCCATATTTCAACAAGTTGATCAGGATATTGGCAACTAGGTGCATGACGCAGgtgatgcttccgtgatgactgagtagtaatattgctggtgattttgacaggatatcgccatatttaacattttaaatttattactacgcag

upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 19
GGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaatttgaatgagaacctagatttagaatttacaagaa-aaaataaattgagtttttgttttg-----ttttgt---tttgtttttag--------------------
|||||||||||||||||||||||| | || || ||||| || ||||| |||||||| |||||||  | |  ||||||||  |  || |  |    |    ||| |  | |    |  | | || || |       |  |     ||| |||||                      
GGTGATGATCCATACTTCAATAAGCTTATTCGAATACTAGCGACTAGATGCATGACACAGgtaatatca-cttgaatgatcaagtaaacctgttttcgttaagtatgagacttctgaaatgttcgtgtaagaaaatcctaaaagtttattttttctcctgattctcaaaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304827|gb|FG997037.1|FG997037
EST:     CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAG                         GCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTAT
genomic: CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaa ... ttgtttttagGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTAT
EST: gi|51335336|gb|CO979202.1|CO979202
EST:     CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGNNNCAG                         GCAGTTTATTNCTGCAGTGGGGANNNTAGCCCTCCAGAATATCATCATTAT
genomic: CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaa ... ttgtttttagGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTAT
EST: gi|7232728|gb|AW568082.1|AW568082
EST:     CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAG                         GCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTAT
genomic: CATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaattgaa ... ttgtttttagGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTAT