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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGgtaatatcgttcgaccttcttttaactggtttgaaaaaaaatgattgctgtggttatagcaatttcttatgcctttattgataaacctttatctggcag

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g03710.1 (Oryza sativa), 5'ss of exon 12
TATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGgtaa---tatcgttcg-accttcttttaactggtttgaaaaaaaatgattgctgtggttatagcaattt---cttatgcctttattgataaacctttatctggcag-----------------------------------
 ||||||| ||||| |||||||| |||||  |||||||||| || ||||| || |||||||  | ||| || ||||||||||| || |||||||| || ||||    |||   |     | | |    ||||| || |   |||  |      ||   |||  ||||||     ||  | | || || ||||   |||  ||  ||                                   
CATCCTGGTACTCCTCTTGATGAGGAGGCCTCACAAAGGGGCACTTCTGTATATCTTGTTGGACAGCGAATTGACATGCTTCCAAAGCCTCTTACTGAAGgtatctctattacttatgtcgtatgcacactggattaacccaaagcgg--aacgtttctatttcaatttaagaatactcatataatgttaaagtattag-tgaaagtaactaatgatcttctcaaatatgctggtttctag

upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G17510.1 (Arabidopsis thaliana), 5'ss of exon 12
TATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGgtaatatcgttcgaccttcttttaactggtttgaaaaaaaatgattgctgtggttatagcaatttcttatgcctttattgataaacctttatctggcag
 | ||||| |||||  | |||||||||||  || |||| || || |||||||||||||||||||| || || |||||||||||||||||| | || || ||||||||| |   ||     |  |     ||||      |||   |  ||   | ||   |  |  |  ||| | ||                      
CACCCTGGTACTCCTTTGGATGATGAGGCATCAAAAAGAGGCACATCTGTCTACCTTGTTGAGCGCCGTATTGACATGCTTCCCAAACCTTTAACTGAAGgtaatatcttcttacagaaatacattccctttgtgttggaatttcta-tgcactcatgaaacatgatattgcttgtag---------------------

upper sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 5'ss of exon 12
TATCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACGTCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGgtaatatcgttc----gaccttcttt------------taactggtttgaaaaaaaatgattgctgtggttatagcaatttcttat--------gcctttattgataa--acctttatctggcag
 | |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||  | || ||||||||||| |||||| | ||||| |||  | || ||     ||  || |||            ||  | |||||| | |||    |   ||   | ||    ||||||| |        |  || |||  | |  | |||||||| ||||
CACCCTGGCACTCCCCTTGATGACGAGGCTGCCCAAAGGGGCACATCTGTCTACCTTGTTGAGCGCAGAATTGACATGCTTCCTAAACCTTTAACGGAAGgtggtttctttttatagaaattttttatatgttgggtgtatgttgtttgatataaagaactgcttgatttgatgctgatttcttgttggttctagaattcatttgtcataagctttatcttgcag