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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgacttaacttctgctccctgttactgttatttttatctacacttaacagcctattctaacgtatgttgatctttgttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA

Basic information

species Glycine max
transcript GLYMA04G39980.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 22
----------------------------gtatgtgacttaacttctgctccctgttactgtt-atttttatctacacttaacagcctattctaac-gtatgttgatctttgttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA
                             ||| |  || |    |    || |  |   |   |  | |   | ||| |  |  || | |  |   | ||  |     || |      ||||| |||||||| ||||  ||||||||||| |||||||| ||||| ||| |||| ||||| |||||
gtatgtacccatatgcattccaagaaacctatctctctcacacccgatccctttgtgtcgcccaagtgtgcatgcacatgcccacccaattcacttgcataatctatcttttctgtgtagGCCGACAGACACAGAGGCCAGAATAGTGAAGATAAGATCCAATGGCTTTATTGTATTTGTGCCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304828|gb|FG997038.1|FG997038
EST:     GCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAG                         GCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT
genomic: GCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGgtatgtgact ... gttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT
EST: gi|51335336|gb|CO979202.1|CO979202
EST:     GCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAG                         GCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT
genomic: GCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGgtatgtgact ... gttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT
EST: gi|193406314|gb|FK370625.1|FK370625
EST:     GGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAG                         GCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT
genomic: GGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGgtatgtgact ... gttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatctacacttaacagcctattctaacgtatgttgatctttgttcacacagGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAA
                                        tctttgttc  CT-rich tract
                      tattctaa  TA-rich tract