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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTGATCCTTCACTTGTAACTTGCATAGAGGGTATTGTCAGAGTCCAAACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaacccctagcaaatggagtgagtccctagagaattaagtctaatttaagttcagtatttgtctgcttgctaatgctgactttgttgatagttcta...

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193328704|gb|FK293478.1|FK293478
EST:     AATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208217774|gb|GE016492.1|GE016492
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|207814429|gb|GD787246.1|GD787246
EST:     CTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: CTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208294785|gb|GE093890.1|GE093890
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATACAAATAGAATGGTCCAATAAGCCAACCGTAAAGGTAGC
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAAT-C-AAT-GAATGGTCCAATAAGCCAACCGTAAAGGTAGC
EST: gi|208195192|gb|GD992171.1|GD992171
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208248290|gb|GE044487.1|GE044487
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193707095|gb|FK646359.1|FK646359
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|192317206|gb|FK009793.1|FK009793
EST:     ACGAGTGGCATTACAAGGGGAATCACAATACTTTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGTATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208255817|gb|GE052796.1|GE052796
EST:     GTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208153422|gb|GD951381.1|GD951381
EST:     GAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193405042|gb|FK375485.1|FK375485
EST:     GAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193314244|gb|FK280563.1|FK280563
EST:     AATCACAATACTCTACAACAAACAAAAAAG                         GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: gi|193369815|gb|FK337175.1|FK337175
EST:     GGGGAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193430132|gb|FK396004.1|FK396004
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193357917|gb|FK318957.1|FK318957
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAACGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208275880|gb|GE075168.1|GE075168
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193650578|gb|FK595085.1|FK595085
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208309138|gb|GE102062.1|GE102062
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAAGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208326689|gb|GE118943.1|GE118943
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193329427|gb|FK295685.1|FK295685
EST:     GGGGAAGTCACAATACTCTACAACAAACAAAAAAG                         GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
genomic: GGGGAA-TCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: gi|208284724|gb|GE084222.1|GE084222
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|207808687|gb|GD780590.1|GD780590
EST:     GGGAATCACTAATACTTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCAC-AATAC-TCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208156898|gb|GD956340.1|GD956340
EST:     GAATCACGATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208283254|gb|GE084572.1|GE084572
EST:     GGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|151409754|gb|EV279562.1|EV279562
EST:     ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208121302|gb|GD917121.1|GD917121
EST:     GAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193523461|gb|FK481766.1|FK481766
EST:     AATCACAATACTCTACAGCAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208179779|gb|GD977982.1|GD977982
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208101741|gb|GD900178.1|GD900178
EST:     GGGAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193667615|gb|FK608131.1|FK608131
EST:     GAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|207710130|gb|GD691192.1|GD691192
EST:     GGGGAATCACTATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193685510|gb|FK627028.1|FK627028
EST:     GAGTGGCCATTAC-GGGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GAGTGG-CATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193428110|gb|FK398812.1|FK398812
EST:     GGGAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208173642|gb|GD966385.1|GD966385
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193724118|gb|FK658848.1|FK658848
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|207801395|gb|GD775495.1|GD775495
EST:     GGGGAATCGCAATTACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAA-TACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193531907|gb|FK488437.1|FK488437
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: gi|193451944|gb|FK419428.1|FK419428
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: gi|193545716|gb|FK500835.1|FK500835
EST:     GGGGAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTAGTCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-G-CTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCT
EST: gi|193390425|gb|FK354973.1|FK354973
EST:     GGGGAATCACAATACTCTACAACAAAC-AAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208328203|gb|GE127485.1|GE127485
EST:     GGGAATCACTAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCAC-AATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208184884|gb|GD981132.1|GD981132
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|208081745|gb|GD879989.1|GD879989
EST:     GGGGAATCACTAATTACTCTACAACAAACAAAAAAG                         GTTTGTCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
genomic: GGGGAATCAC-AA-TACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTG-CTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: gi|193315675|gb|FK281811.1|FK281811
EST:     GGGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: gi|193455087|gb|FK421304.1|FK421304
EST:     GGGAATCACAATACTCTACAACAAACAAAAAAG                         GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT