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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctttgacaaattcctttgtgctcctttgctatacttgagtcattttgtcttacttaaatgggtaactgtcctttgataaatcttgtatggttt...

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00280.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0094g01420.t01 (Vitis vinifera), 5'ss of exon 6
ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctttgacaaattcctttgtgctcctttgctatacttgagtcattttgtcttacttaaatgggtaactgtcctttgataaatcttgtatggttt------------------------
|||||||| |||||||| ||||||||| ||||||| |||||||| |||||  | || || |||||||||||||||||||| ||||||||| |||| |||  ||  | | |     ||   | |   | |     | | | |   |||||| || |   || |  || ||| || | ||        | | || | ||                        
ATATTTGGCGATCCAGAAGCTGCAGATATTGTATTCACAAGTGGAGCAGACATTCTGGCTGTGGGGATAAATGTTACCCATCAAGTTGTATTGACAGgtgacctttgtaa-----tctcatatatccat-----acagtaggaacattttttcctttgtagaatggaaacagttcattttctctcttggaattgattctgatgcatgtctgaatgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326906|gb|GR836515.1|GR836515
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCA-TACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254346378|gb|GR856100.1|GR856100
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAA-TTG-CA-GCTCAA-TGGAAAATTTGTGCA
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCA
EST: gi|192317206|gb|FK009793.1|FK009793
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGTAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT