Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagcatgattctattttaattatggtgtatgtcattgaactttctctggcaccagactcaccactgttctggtttactcatctaatacaaaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACTTGAACAAAATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAA

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326906|gb|GR836515.1|GR836515
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCA-TACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254346378|gb|GR856100.1|GR856100
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAA-TTG-CA-GCTCAA-TGGAAAATTTGTGCA
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCA
EST: gi|192317206|gb|FK009793.1|FK009793
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGTAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG                         AATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT
genomic: AGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTGgtaccccctt ... aaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggcaccagactcaccactgttctggtttactcatctaatacaaaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACTTGAACAAAATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAA
                                   atctaatacaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagcatgattctattttaattatggtgtatgtcattgaactttctctggcaccagactcaccactgttctggtttactcatctaatacaaaatgactagAATCTGATCGAGAAAAATTGGCAAGCTCAAATGGAAAATTTGTGCAATACTTGAACAAAATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAA

- -gcatgat
- - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - caccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt