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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttcatagtgcatttaagaattggtagagacctaataatctactttactaattatatttactttttatacagGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCACTTGTAACTTGCATAGAGGGTATTGTCAGAGTCCAAACGAGTGGCATTAC

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317206|gb|FK009793.1|FK009793
EST:     AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAG                         GGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
genomic: AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAGgtttgtgttc ... ttttatacagGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAG                         GGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
genomic: AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAGgtttgtgttc ... ttttatacagGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAG                         GGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
genomic: AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAGgtttgtgttc ... ttttatacagGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCAC
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAG                         GGGTTTACCTT
genomic: AATCTTGGATGTATATTTCTCTTACCATCGGGAGGCATACAATGTCAAAGgtttgtgttc ... ttttatacagGGGTTTACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattggtagagacctaataatctactttactaattatatttactttttatacagGGGTTTACCTTCATGACCCAACTGTGGTTCTTGCAGCTGTTGATCCTTCACTTGTAACTTGCATAGAGGGTATTGTCAGAGTCCAAACGAGTGGCATTAC
                            tactaat  putative branch site (score: 1)
                                       tttacttttt  putative PPT
               taataatctactttac  TA-rich tract