Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttccattctgcatcaaattcttaatcttcaatataaatattatatcattcacaactcaatctgtctaactctttggttggatttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00280.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g01420.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtatttccattctgcatcaaattctta-atcttcaatataa----atattatatcattcacaactcaatctgtctaactctttggttggatttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG
   |   ||   |  |    || | |  |   | || || | | |    ||  | | ||  || |     ||||    |   ||| ||| |||| |  |  ||||||||||| |||||||| ||||||||| ||||||| |||||||| |||||  | || || |||||||||||||||||||| ||||||||| |||| |
--aaaccttctgaagcaatctccattcttcctacctacattgtgatactattctctctctctctctctctaatcctctttggtctctggatggaatgat--cagATATTTGGCGATCCAGAAGCTGCAGATATTGTATTCACAAGTGGAGCAGACATTCTGGCTGTGGGGATAAATGTTACCCATCAAGTTGTATTGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319150|gb|FK006906.1|FK006906
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCA-T                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|254326906|gb|GR836515.1|GR836515
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|254346378|gb|GR856100.1|GR856100
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|192317206|gb|FK009793.1|FK009793
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT
EST: gi|16997071|gb|BM086443.1|BM086443
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAG
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAG
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAAT                         ATATTTGGTGATCCAGAGGCCGCAGATGTTGTATTTACAAGTGGGGCAGAT
genomic: GTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAGCCAATgtgagtattt ... tttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattatatcattcacaactcaatctgtctaactctttggttggatttgttccagATATTTGGTGATCCAGAGGCTGCAGATGTTGTATTTACAAGTGGGGCAGATGTACTTGCAGTGGGGATAAATGTTACCCACCAAGTTGTACTGACTG
                          gtctaac  putative branch site (score: 2)
                                             tttgttcc  putative PPT
     atatcatt  TA-rich tract