1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCGGAAAGAAGTGAAGTCATAAGTAATCTCTCCTCTCTTGTAAACATGGCAGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagatacatatctatctggctctcaatttttgtttgtttttcttgtggtaatccaaatcagtcagaagtcataagtttctgtttctttgctttttctcacaaaattaacttttactttgactgcttgatctatcaattccttgtttcactgagaattgcaagtggtttctgtag
species | Glycine max |
transcript | GLYMA0048S00280.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|19054280|gb|BM732947.1|BM732947
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|254326906|gb|GR836515.1|GR836515
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|7685922|gb|AW756570.1|AW756570
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|9259144|gb|BE347291.1|BE347291
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCCGAGGGTGGAAGTEST: gi|254346378|gb|GR856100.1|GR856100
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCC-GAGGTTG-AAGT
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|298180188|gb|HO025403.1|HO025403
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|10709506|gb|BF009230.1|BF009230
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|192317205|gb|FK009792.1|FK009792
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|16997071|gb|BM086443.1|BM086443
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|192325277|gb|FK019148.1|FK019148
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|6071945|gb|AW101332.1|AW101332
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|5057387|gb|AI735863.1|AI735863
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|7685834|gb|AW756482.1|AW756482
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTAEST: gi|192319151|gb|FK006907.1|FK006907
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGAAAGAAGTGAAGTCATAAGTAATCTCTCCTCTCTTGTAAACATGGCAGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagatacatatctatctggctctcaatttttgtttgtttttcttgtggtaatccaaatcagtcagaagtcataagtttctgtttctttgctttttctcacaaaattaacttttactttgactgcttgatctatcaattccttgtttcactgagaattgcaagtggtttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA