Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGAAGAATCAGCTGCTTCTTTTTTGGTTCATCAAGCAAAAGTTAACCCTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatatatgtacaattctgcaatatggcattttcatgttactcttcatactgtttttcatgatgacgataatatatgtttgcag

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319150|gb|FK006906.1|FK006906
EST:     CTGGCAAGGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|19054280|gb|BM732947.1|BM732947
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATC
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATC
EST: gi|254326906|gb|GR836515.1|GR836515
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|254346378|gb|GR856100.1|GR856100
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|192317206|gb|FK009793.1|FK009793
EST:     CGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|254346379|gb|GR856101.1|GR856101
EST:     TGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: TGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|298180188|gb|HO025403.1|HO025403
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGG
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGG
EST: gi|254326907|gb|GR836516.1|GR836516
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTGG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|10709506|gb|BF009230.1|BF009230
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACCAATATTGCCTTG                         GCTATACAGCTGGATCCCGGA-TTTGCTAAGAACATTGGGCAGATTCTGAT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCC-GGAATTTGCTAAGAACATTGGGCAGATTCTGAT
EST: gi|16997071|gb|BM086443.1|BM086443
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTG                         GCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT
genomic: CTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatata ... atgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTGAAGAATCAGCTGCTTCTTTTTTGGTTCATCAAGCAAAAGTTAACCCTGGCAAAGTCACTGTGGTCGCATTGGGCCCGCTTACAAATATTGCCTTGgtatgatatatgtacaattctgcaatatggcattttcatgttactcttcatactgtttttcatgatgacgataatatatgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG