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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatacatatctatctggctctcaatttttgtttgtttttcttgtggtaatccaaatcagtcagaagtcataagtttctgtttctttgctttttctcacaaaattaacttttactttgactgcttgatctatcaattccttgtttcactgagaattgcaagtggtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTATTGGACTCACAACCATCTTTGGAAATGTGTACACCACTCTGGCAACCAG

Basic information

species Glycine max
transcript GLYMA0048S00280.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00280.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G05620.1 (Arabidopsis thaliana), 3'ss of exon 1
gttagatacatatctatctggctctcaatttttgtttgtttttcttgtggtaatccaaatcagtcagaagtcataagtttctgtttctttgctttttctcacaaaattaacttttactttgactgcttgatctatcaattccttgtttcactgagaattgcaagtggtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTATTGGACTCACAACCATCTTTGGAAATGTGTACACCACTCTGGCAACCAG
                                                                   |       |  ||     |||  | ||||| | |     || |||||   |  ||  |||  ||| || | ||  ||   |||||| || |||    ||     |||||||||||| ||||| |||||| | ||| || | ||||| || ||||| || ||||| ||||| || ||||||||||| ||||| |||||||| || ||  |
------------------------------------------------------------------aactctgggaaattagagatctgagtttttttttaagcgtttgactttacttaagagagct--atc-atgagtttatt--ctcactg-gatttgatgatg----ttgtagATGATGCAATGGCGATATTCGTAGCTTTAAATTCACCTGAAGTTGATGTCATTGGCCTCACTACTATCTTTGGAAACGTGTATACCACTCTCGCCACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319150|gb|FK006906.1|FK006906
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|19054280|gb|BM732947.1|BM732947
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|254326906|gb|GR836515.1|GR836515
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|7685922|gb|AW756570.1|AW756570
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|9259144|gb|BE347291.1|BE347291
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCCGAGGGTGGAAGT
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCC-GAGGTTG-AAGT
EST: gi|254346378|gb|GR856100.1|GR856100
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|298180188|gb|HO025403.1|HO025403
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|10709506|gb|BF009230.1|BF009230
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|192317205|gb|FK009792.1|FK009792
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|16997071|gb|BM086443.1|BM086443
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|192325277|gb|FK019148.1|FK019148
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|6071945|gb|AW101332.1|AW101332
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|5057387|gb|AI735863.1|AI735863
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|7685834|gb|AW756482.1|AW756482
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
EST: gi|192319151|gb|FK006907.1|FK006907
EST:     AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCG                         ATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA
genomic: AGCCGAAACGGAACCAAAGAAGATCATAATTGATACCGACCCTGGCATCGgttagataca ... gtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgcttgatctatcaattccttgtttcactgagaattgcaagtggtttctgtagATGATGCTATGGCAATATTCCTTGCTCTACAATCACCCGAGGTTGAAGTTATTGGACTCACAACCATCTTTGGAAATGTGTACACCACTCTGGCAACCAG
                                              tttctgt  CT-rich tract
           tatcaatt  TA-rich tract