1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attattatctttgctgataaaaaaaaaaaaaaaacttttgtcgtccattcgttttatggctcctcacgtgtttaccttatctctgtttctaataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTGACAGTTGATGCTCCTAGAGTTATGAAATTGGTAATGGATCGTCTTGTG
species | Glycine max |
transcript | GLYMA0048S00280.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208217774|gb|GE016492.1|GE016492
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|207814429|gb|GD787246.1|GD787246
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: CTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208294785|gb|GE093890.1|GE093890
genomic: CTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATACAAATAGAATGGTCCAATAAGCCAACCGTAAAGGTAGCEST: gi|208195192|gb|GD992171.1|GD992171
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAAT-C-AAT-GAATGGTCCAATAAGCCAACCGTAAAGGTAGC
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208248290|gb|GE044487.1|GE044487
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193707095|gb|FK646359.1|FK646359
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|192317206|gb|FK009793.1|FK009793
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: ACGAGTGGCATTACAAGGGGAATCACAATACTTTACAACAAACAAAAAAG GTTTGCTGAAATCAATGTATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208255817|gb|GE052796.1|GE052796
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208153422|gb|GD951381.1|GD951381
genomic: GTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193405042|gb|FK375485.1|FK375485
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAATCACAATACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|254346379|gb|GR856101.1|GR856101
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|254326907|gb|GR836516.1|GR836516
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193314244|gb|FK280563.1|FK280563
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: AATCACAATACTCTACAACAAACAAAAAAG GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGEST: gi|193369815|gb|FK337175.1|FK337175
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: GGGGAATCACAATACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193430132|gb|FK396004.1|FK396004
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193357917|gb|FK318957.1|FK318957
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAACGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208275880|gb|GE075168.1|GE075168
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193650578|gb|FK595085.1|FK595085
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208309138|gb|GE102062.1|GE102062
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAAGTAGCTGTEST: gi|208326689|gb|GE118943.1|GE118943
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193329427|gb|FK295685.1|FK295685
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAAGTCACAATACTCTACAACAAACAAAAAAG GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGEST: gi|208284724|gb|GE084222.1|GE084222
genomic: GGGGAA-TCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|207808687|gb|GD780590.1|GD780590
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACTAATACTTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208156898|gb|GD956340.1|GD956340
genomic: GGGAATCAC-AATAC-TCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAATCACGATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208283254|gb|GE084572.1|GE084572
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|151409754|gb|EV279562.1|EV279562
genomic: GGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208121302|gb|GD917121.1|GD917121
genomic: ACGAGTGGCATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193523461|gb|FK481766.1|FK481766
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: AATCACAATACTCTACAGCAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208179779|gb|GD977982.1|GD977982
genomic: AATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208101741|gb|GD900178.1|GD900178
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193667615|gb|FK608131.1|FK608131
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|207710130|gb|GD691192.1|GD691192
genomic: GAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACTATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193685510|gb|FK627028.1|FK627028
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GAGTGGCCATTAC-GGGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193428110|gb|FK398812.1|FK398812
genomic: GAGTGG-CATTACAAGGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208173642|gb|GD966385.1|GD966385
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193724118|gb|FK658848.1|FK658848
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|207801395|gb|GD775495.1|GD775495
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCGCAATTACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193531907|gb|FK488437.1|FK488437
genomic: GGGGAATCACAA-TACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGEST: gi|193451944|gb|FK419428.1|FK419428
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTAGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGEST: gi|193545716|gb|FK500835.1|FK500835
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-GCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: GGGGAATCACAATACTCTACAACAAAC-AAAAAG GTTTAGTCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTEST: gi|193390425|gb|FK354973.1|FK354973
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTT-G-CTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCT
EST: GGGGAATCACAATACTCTACAACAAAC-AAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208328203|gb|GE127485.1|GE127485
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACTAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208184884|gb|GD981132.1|GD981132
genomic: GGGAATCAC-AATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|208081745|gb|GD879989.1|GD879989
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGGAATCACTAATTACTCTACAACAAACAAAAAAG GTTTGTCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGEST: gi|193315675|gb|FK281811.1|FK281811
genomic: GGGGAATCAC-AA-TACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTG-CTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTG
EST: GGGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTEST: gi|193455087|gb|FK421304.1|FK421304
genomic: GGGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
EST: GGGAATCACAATACTCTACAACAAACAAAAAAG GTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
genomic: GGGAATCACAATACTCTACAACAAACAAAAAAGgtagaaaccc ... aataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGT
cattcgttttatggctcctcacgtgtttaccttatctctgtttctaataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTGACAGTTGATGCTCCTAGAGTTATGAAATTGGTAATGGATCGTCTTGTG
ttctaat putative branch site (score: 2)
tttctaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattatctttgctgataaaaaaaaaaaaaaaacttttgtcgtccattcgttttatggctcctcacgtgtttaccttatctctgtttctaataaaccagGTTTGCTGAAATCAATGAATGGTCCAATAAGCCAACCGTAAAGGTAGCTGTGACAGTTGATGCTCCTAGAGTTATGAAATTGGTAATGGATCGTCTTGTG
- - - - - -tgctgat
- - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - -tccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctca