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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcggcttagccagaccggcacccatacgggcaccggactgctgctggtggccacgtccaagcacggccaagcagtcaatgcctacacctgactcgcgtgtgtgctcgtcacagcccacgcaccgatgccctggtaaacactgctgtctccgcctgtacacgtgacctgtactgcccccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808713|gb|FC094093.1|FC094093
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGGGTGCTGCACACGCCATCCATCGAAGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|9460414|gb|BE453219.1|BE453219
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|15694167|gb|BI718472.1|BI718472
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|15692659|gb|BI716964.1|BI716964
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         -CTGCAGTTCACCGTTGA
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGA
EST: gi|10791897|gb|AV629263.1|AV629263
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|23363546|gb|BU651366.1|BU651366
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGC
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGC
EST: gi|22067685|gb|BQ817747.1|BQ817747
EST:     ACGTCGCGTCGCCCAAACG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|22060738|gb|BQ813886.1|BQ813886
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|22060737|gb|BQ813885.1|BQ813885
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|22067686|gb|BQ817748.1|BQ817748
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
EST: gi|23363980|gb|BU651800.1|BU651800
EST:     ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCG                         GCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG
genomic: ATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAAGCGgtgcgtcgcg ... ctgcccccagGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGG